#
# wordlists for BLAST annotation


## biglist collected from GO_sleek

positive_list = [
	"chain",
	"lysosome",
	"cytosol",
	"Golgi", "golgi",
	"homeostasis",
	"death",
	"reservoir",
	"microtubule",
	"thylakoid",
	"kinase",
	"enzyme",
	"actin",
	"factor",
	"derivative",
	"secondary",
	"plasma",
	"endogenous",
	"chromatin",
	"reproduction",
	"electron",
	"cellular",
	"proteinaceous",
	"peptidase",
	"structural",
	"respiratory",
	"particle",
	"oxygen",
	"stimulus",
	"signal",
	"catabolic",
	"activity",
	"receptor",
	"embryonic",
	"endosome",
	"metabolic",
	"nucleoplasm",
	"nucleic",
	"cytoplasmic",
	"acid",
	"organizing",
	"transport",
	"viral",
	"biogenesis",
	"matrix",
	"apparatus",
	"space",
	"nuclear",
	"cell",
	"membrane-bounded",
	"phosphatase",
	"membrane",
	"proliferation",
	"lipid",
	"ion",
	"carrier",
	"expression",
	"cilium",
	"epigenetic",
	"triplet",
	"wall",
	"antioxidant",
	"mitochondrial",
	"motor",
	"amino",
	"plastid",
	"morphogenesis",
	"anatomical",
	"regulation",
	"symbiosis",
	"neurotransmitter",
	"adaptor",
	"envelope",
	"mutualism",
	"external",
	"biotic",
	"translation",
	"endoplasmic",
	"chaperone",
	"lead",
	"regulator",
	"calcium",
	"growth",
	"behavior",
	"process",
	"cytoplasm",
	"binding",
	"extracellular",
	"carbohydrate",
	"tag",
	"mitochondrion",
	"cytoskeleton",
	"transduction",
	"transcription",
	"ribosome",
	"parasitism",
	"complex",
	"recognition",
	"peroxisome",
	"modification",
	"channel",
	"development",
	"nuclease",
	"codon-amino",
	"vesicle",
	"molecule",
	"phosphoprotein",
	"reticulum",
	"organization",
	"transporter",
	"nucleotide",
	"response",
	"structure",
	"cycle",
	"abiotic",
	"stress",
	"nucleolus",
	"center",
	"encompassing",
	"nutrient",
	"signaling",
	]


## first screen, need evolve...
negative_list = [
        "clone", "gonome", "hypothetical", "sequence", "chromosome", "library", 
        ]

bad_phrases = [
        "Tetraodon nigroviridis full-length cDNA",
        ]



